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  2. MC3 lipid CpHMD parametrization test (dV/dl coefficients, after Boltzmann reweighting)
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  4. s_6/MD
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MD-A00C7U

MC3 lipid CpHMD parametrization test (dV/dl coefficients, after Boltzmann reweighting)

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  • s_1/MD
  • s_2/MD
  • s_3/MD
  • s_4/MD
  • s_5/MD
  • s_6/MD
  • s_7/MD
  • s_8/MD
  • s_9/MD
  • s_10/MD
OverviewTrajectory viewerAnalyses
Warnings
  • Cross-PBC contacts detected in 4/2001 frames. Non-PBC molecules appear to contact each other across periodic boundaries. Frame 1557 has the most atoms in contact (15). Closest pairs in this frame: M1(MC3T).H18S (index 47) — S4677(BUF).BUF (index 128) (3.12 Å) M1(MC3T).H17R (index 43) — S4677(BUF).BUF (index 128) (3.33 Å) M1(MC3T).C18 (index 45) — S4677(BUF).BUF (index 128) (3.67 Å) M1(MC3T).C17 (index 42) — S4677(BUF).BUF (index 128) (3.93 Å) M1(MC3T).H19R (index 49) — S4677(BUF).BUF (index 128) (3.96 Å) etc. (14 pairs)

Force Field & Water Model

Force field
  • CHARMM36
Water modelTIP3P

Simulation Parameters

Frames
2,001
Frequency
50 ps
Simulation length
100.05 ns
Timestep
2 fs
Temperature
300 K
Ensemble
NPT

Simulation Box

Box type
  • cubic
X
52.222 nm
Y
52.222 nm
Z
52.222 nm
Box volume
142,416.13 nm³

System Composition

Total system
129atoms4residues
Protein
0atoms0residues
Nucleic acids
0atoms0residues
Lipids
0atoms0residues
Carbohydrates
0atoms0residues
Solvent
0atoms0residues

Counter-Ions

Cations (+)
0
Anions (-)
0
Total ions
0