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  2. MC3 lipid CpHMD parametrization test (dV/dl coefficients, after Boltzmann reweighting)
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MD-A00C7U

MC3 lipid CpHMD parametrization test (dV/dl coefficients, after Boltzmann reweighting)

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  • s_1/MD
  • s_2/MD
  • s_3/MD
  • s_4/MD
  • s_5/MD
  • s_6/MD
  • s_7/MD
  • s_8/MD
  • s_9/MD
  • s_10/MD
OverviewTrajectory viewerAnalyses
Warnings
  • Cross-PBC contacts detected in 1/2001 frames. Non-PBC molecules appear to contact each other across periodic boundaries. Frame 28 has the most atoms in contact (7). Closest pairs in this frame: M1(MC3T).H21S (index 77) — S4677(BUF).BUF (index 128) (3.89 Å) M1(MC3T).H5 (index 23) — S4677(BUF).BUF (index 128) (3.97 Å) M1(MC3T).H21R (index 76) — S4677(BUF).BUF (index 128) (4.47 Å) M1(MC3T).C21 (index 75) — S4677(BUF).BUF (index 128) (4.62 Å) M1(MC3T).C5 (index 22) — S4677(BUF).BUF (index 128) (4.86 Å) etc. (6 pairs)

Force Field & Water Model

Force field
  • CHARMM36
Water modelTIP3P

Simulation Parameters

Frames
2,001
Frequency
50 ps
Simulation length
100.05 ns
Timestep
2 fs
Temperature
300 K
Ensemble
NPT

Simulation Box

Box type
  • cubic
X
52.222 nm
Y
52.222 nm
Z
52.222 nm
Box volume
142,416.13 nm³

System Composition

Total system
129atoms4residues
Protein
0atoms0residues
Nucleic acids
0atoms0residues
Lipids
0atoms0residues
Carbohydrates
0atoms0residues
Solvent
0atoms0residues

Counter-Ions

Cations (+)
0
Anions (-)
0
Total ions
0